Version 5.4
Mus musculus Gene: Limch1
Summary
InnateDB Gene IDBG-167679.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Limch1
Gene Name LIM and calponin homology domains 1
Synonyms 3732412D22Rik; mKIAA1102
Species Mus musculus
Ensembl Gene ENSMUSG00000037736
Encoded Proteins
IDBP-167681
LIM and calponin homology domains 1
IDBP-167683
LIM and calponin homology domains 1
IDBP-400908
LIM and calponin homology domains 1
IDBP-400907
LIM and calponin homology domains 1
IDBP-400906
LIM and calponin homology domains 1
IDBP-535358
LIM and calponin homology domains 1
IDBP-535743
LIM and calponin homology domains 1
IDBP-540257
LIM and calponin homology domains 1
IDBP-540137
LIM and calponin homology domains 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000064042:
Gene Information
Type Protein coding
Genomic Location Chromosome 5:66745835-67057159
Strand Forward strand
Band C3.1
Transcripts
ENSMUST00000101164 ENSMUSP00000098723
ENSMUST00000038188 ENSMUSP00000043163
ENSMUST00000118242 ENSMUSP00000112732
ENSMUST00000119854 ENSMUSP00000112651
ENSMUST00000117601 ENSMUSP00000113544
ENSMUST00000130228 ENSMUSP00000116126
ENSMUST00000122812
ENSMUST00000140428
ENSMUST00000127184 ENSMUSP00000114681
ENSMUST00000132991 ENSMUSP00000123337
ENSMUST00000147050
ENSMUST00000137394
ENSMUST00000135334
ENSMUST00000153174 ENSMUSP00000118979
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 4 interaction(s) predicted by orthology.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 4 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003674 molecular_function
GO:0003779 actin binding
GO:0005515 protein binding
GO:0008270 zinc ion binding
Biological Process
GO:0008150 biological_process
GO:0031032 actomyosin structure organization
Cellular Component
GO:0005575 cellular_component
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000064042
View Gene Order
ENSBTAG00000010677
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.374778 Mm.422133 Mm.481371 Mm.490692
RefSeq NM_001001980 NM_001256122 XM_006504179 XM_006504182 XM_006504185
OMIM
CCDS CCDS39102 CCDS57347
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca